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This glossary contains a number of definitions  from the following publication:
J. M. Cock; Tessmar-Raible, K.; Boyen, C.; Viard, F. (Eds.), Introduction to Marine Genomics, vol. 1, 1st ed., Advances in Marine Genomics Vol. (Springer, 2010). Available from: http://www.springer.com/life+sciences/ecology/book/978-90-481-8616-7?cm_mmc=Google-_-Book%20Search-_-Springer-_-0

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Term Definition
HMMs

Hidden Markov Models (HMMs) allow the integration of diverse sequence features into a coherent, probabilistic framework. For the task of gene identification,  HMMs may include states modeling introns, exons, intergenic regions, start and stop codons, splice signals, polyadenyation signals and ribosomal binding sites.

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